hi,
I think you should contact 2d toolkit and ask about this. Haven't gone that far with 2d toolkit yet myself so can't really help you. I know that with EZGUI this kind of things are sorted with a manager, where you dfeine which camera should check for touch etc etc, so I assume 2d toolkit might have something.
the other thing tho, could be that if your camera are not in the same place, then the mouse pick position is of course wrong.
you could get away with one camera by attaching the ui to the camera, could that not be an easier way to manage your scene? I do use multiple camera set up, so not saying its wrong, it just might not be necessary here.
Bye,
Jean