A simple way is to get your direction, normalize it, and multiply that by your speed. The result is your final wind movement. This result should be applied to your ship by adding force or adding to the velocity...
If you move your ship using velocity, you must add the final wind movement using velocity. If you use add force, then you must do the same, because if you move with velocity and add wind as a force, your velocity will cancel out the force as velocity overwrites your physics movement...
This is a simple way to apply a wind force to your object...